Genome Sequence Resources for the Wheat Stripe Rust Pathogen (Puccinia striiformis f. sp. tritici) and the Barley Stripe Rust Pathogen (Puccinia striiformis f. sp. hordei).
Identifieur interne : 000370 ( Main/Exploration ); précédent : 000369; suivant : 000371Genome Sequence Resources for the Wheat Stripe Rust Pathogen (Puccinia striiformis f. sp. tritici) and the Barley Stripe Rust Pathogen (Puccinia striiformis f. sp. hordei).
Auteurs : Chongjing Xia [États-Unis] ; Meinan Wang [États-Unis] ; Chuntao Yin [États-Unis] ; Omar E. Cornejo ; Scot H. Hulbert [États-Unis] ; Xianming Chen [États-Unis]Source :
- Molecular plant-microbe interactions : MPMI [ 0894-0282 ] ; 2018.
Descripteurs français
- KwdFr :
- MESH :
- génétique : Basidiomycota, Génome fongique.
- microbiologie : Hordeum, Maladies des plantes, Triticum.
- Analyse de séquence d'ARN, Génomique, Génotype, Phénotype, Séquençage nucléotidique à haut débit.
English descriptors
- KwdEn :
- MESH :
- genetics : Basidiomycota, Genome, Fungal.
- microbiology : Hordeum, Plant Diseases, Triticum.
- Genomics, Genotype, High-Throughput Nucleotide Sequencing, Phenotype, Sequence Analysis, RNA.
Abstract
Puccinia striiformis f. sp. tritici causes devastating stripe (yellow) rust on wheat and P. striiformis f. sp. hordei causes stripe rust on barley. Several P. striiformis f. sp. tritici genomes are available, but no P. striiformis f. sp. hordei genome is available. More genomes of P. striiformis f. sp. tritici and P. striiformis f. sp. hordei are needed to understand the genome evolution and molecular mechanisms of their pathogenicity. We sequenced P. striiformis f. sp. tritici isolate 93-210 and P. striiformis f. sp. hordei isolate 93TX-2, using PacBio and Illumina technologies and RNA sequencing. Their genomic sequences were assembled to contigs with high continuity and showed significant structural differences. The circular mitochondria genomes of both were complete. These genomes provide high-quality resources for deciphering the genomic basis of rapid evolution and host adaptation, identifying genes for avirulence and other important traits, and studying host-pathogen interactions.
DOI: 10.1094/MPMI-04-18-0107-A
PubMed: 29792772
Affiliations:
Links toward previous steps (curation, corpus...)
Le document en format XML
<record><TEI><teiHeader><fileDesc><titleStmt><title xml:lang="en">Genome Sequence Resources for the Wheat Stripe Rust Pathogen (Puccinia striiformis f. sp. tritici) and the Barley Stripe Rust Pathogen (Puccinia striiformis f. sp. hordei).</title><author><name sortKey="Xia, Chongjing" sort="Xia, Chongjing" uniqKey="Xia C" first="Chongjing" last="Xia">Chongjing Xia</name><affiliation wicri:level="2"><nlm:affiliation>1 Department of Plant Pathology, Washington State University, Pullman, WA 99164-6430, U.S.A.</nlm:affiliation><country xml:lang="fr">États-Unis</country><wicri:regionArea>1 Department of Plant Pathology, Washington State University, Pullman, WA 99164-6430</wicri:regionArea><placeName><region type="state">Washington (État)</region></placeName></affiliation></author><author><name sortKey="Wang, Meinan" sort="Wang, Meinan" uniqKey="Wang M" first="Meinan" last="Wang">Meinan Wang</name><affiliation wicri:level="2"><nlm:affiliation>1 Department of Plant Pathology, Washington State University, Pullman, WA 99164-6430, U.S.A.</nlm:affiliation><country xml:lang="fr">États-Unis</country><wicri:regionArea>1 Department of Plant Pathology, Washington State University, Pullman, WA 99164-6430</wicri:regionArea><placeName><region type="state">Washington (État)</region></placeName></affiliation></author><author><name sortKey="Yin, Chuntao" sort="Yin, Chuntao" uniqKey="Yin C" first="Chuntao" last="Yin">Chuntao Yin</name><affiliation wicri:level="2"><nlm:affiliation>1 Department of Plant Pathology, Washington State University, Pullman, WA 99164-6430, U.S.A.</nlm:affiliation><country xml:lang="fr">États-Unis</country><wicri:regionArea>1 Department of Plant Pathology, Washington State University, Pullman, WA 99164-6430</wicri:regionArea><placeName><region type="state">Washington (État)</region></placeName></affiliation></author><author><name sortKey="Cornejo, Omar E" sort="Cornejo, Omar E" uniqKey="Cornejo O" first="Omar E" last="Cornejo">Omar E. Cornejo</name><affiliation><nlm:affiliation>2 School of Biological Sciences, Washington State University; and.</nlm:affiliation><wicri:noCountry code="subField">Washington State University; and</wicri:noCountry></affiliation></author><author><name sortKey="Hulbert, Scot H" sort="Hulbert, Scot H" uniqKey="Hulbert S" first="Scot H" last="Hulbert">Scot H. Hulbert</name><affiliation wicri:level="2"><nlm:affiliation>1 Department of Plant Pathology, Washington State University, Pullman, WA 99164-6430, U.S.A.</nlm:affiliation><country xml:lang="fr">États-Unis</country><wicri:regionArea>1 Department of Plant Pathology, Washington State University, Pullman, WA 99164-6430</wicri:regionArea><placeName><region type="state">Washington (État)</region></placeName></affiliation></author><author><name sortKey="Chen, Xianming" sort="Chen, Xianming" uniqKey="Chen X" first="Xianming" last="Chen">Xianming Chen</name><affiliation wicri:level="2"><nlm:affiliation>1 Department of Plant Pathology, Washington State University, Pullman, WA 99164-6430, U.S.A.</nlm:affiliation><country xml:lang="fr">États-Unis</country><wicri:regionArea>1 Department of Plant Pathology, Washington State University, Pullman, WA 99164-6430</wicri:regionArea><placeName><region type="state">Washington (État)</region></placeName></affiliation><affiliation wicri:level="2"><nlm:affiliation>3 Wheat Health, Genetics, and Quality Research Unit, Agriculture Research Service, U.S. Department of Agriculture, Pullman, WA 99164-6430, U.S.A.</nlm:affiliation><country xml:lang="fr">États-Unis</country><wicri:regionArea>3 Wheat Health, Genetics, and Quality Research Unit, Agriculture Research Service, U.S. Department of Agriculture, Pullman, WA 99164-6430</wicri:regionArea><placeName><region type="state">Washington (État)</region></placeName></affiliation></author></titleStmt><publicationStmt><idno type="wicri:source">PubMed</idno><date when="2018">2018</date><idno type="RBID">pubmed:29792772</idno><idno type="pmid">29792772</idno><idno type="doi">10.1094/MPMI-04-18-0107-A</idno><idno type="wicri:Area/Main/Corpus">000358</idno><idno type="wicri:explorRef" wicri:stream="Main" wicri:step="Corpus" wicri:corpus="PubMed">000358</idno><idno type="wicri:Area/Main/Curation">000358</idno><idno type="wicri:explorRef" wicri:stream="Main" wicri:step="Curation">000358</idno><idno type="wicri:Area/Main/Exploration">000358</idno></publicationStmt><sourceDesc><biblStruct><analytic><title xml:lang="en">Genome Sequence Resources for the Wheat Stripe Rust Pathogen (Puccinia striiformis f. sp. tritici) and the Barley Stripe Rust Pathogen (Puccinia striiformis f. sp. hordei).</title><author><name sortKey="Xia, Chongjing" sort="Xia, Chongjing" uniqKey="Xia C" first="Chongjing" last="Xia">Chongjing Xia</name><affiliation wicri:level="2"><nlm:affiliation>1 Department of Plant Pathology, Washington State University, Pullman, WA 99164-6430, U.S.A.</nlm:affiliation><country xml:lang="fr">États-Unis</country><wicri:regionArea>1 Department of Plant Pathology, Washington State University, Pullman, WA 99164-6430</wicri:regionArea><placeName><region type="state">Washington (État)</region></placeName></affiliation></author><author><name sortKey="Wang, Meinan" sort="Wang, Meinan" uniqKey="Wang M" first="Meinan" last="Wang">Meinan Wang</name><affiliation wicri:level="2"><nlm:affiliation>1 Department of Plant Pathology, Washington State University, Pullman, WA 99164-6430, U.S.A.</nlm:affiliation><country xml:lang="fr">États-Unis</country><wicri:regionArea>1 Department of Plant Pathology, Washington State University, Pullman, WA 99164-6430</wicri:regionArea><placeName><region type="state">Washington (État)</region></placeName></affiliation></author><author><name sortKey="Yin, Chuntao" sort="Yin, Chuntao" uniqKey="Yin C" first="Chuntao" last="Yin">Chuntao Yin</name><affiliation wicri:level="2"><nlm:affiliation>1 Department of Plant Pathology, Washington State University, Pullman, WA 99164-6430, U.S.A.</nlm:affiliation><country xml:lang="fr">États-Unis</country><wicri:regionArea>1 Department of Plant Pathology, Washington State University, Pullman, WA 99164-6430</wicri:regionArea><placeName><region type="state">Washington (État)</region></placeName></affiliation></author><author><name sortKey="Cornejo, Omar E" sort="Cornejo, Omar E" uniqKey="Cornejo O" first="Omar E" last="Cornejo">Omar E. Cornejo</name><affiliation><nlm:affiliation>2 School of Biological Sciences, Washington State University; and.</nlm:affiliation><wicri:noCountry code="subField">Washington State University; and</wicri:noCountry></affiliation></author><author><name sortKey="Hulbert, Scot H" sort="Hulbert, Scot H" uniqKey="Hulbert S" first="Scot H" last="Hulbert">Scot H. Hulbert</name><affiliation wicri:level="2"><nlm:affiliation>1 Department of Plant Pathology, Washington State University, Pullman, WA 99164-6430, U.S.A.</nlm:affiliation><country xml:lang="fr">États-Unis</country><wicri:regionArea>1 Department of Plant Pathology, Washington State University, Pullman, WA 99164-6430</wicri:regionArea><placeName><region type="state">Washington (État)</region></placeName></affiliation></author><author><name sortKey="Chen, Xianming" sort="Chen, Xianming" uniqKey="Chen X" first="Xianming" last="Chen">Xianming Chen</name><affiliation wicri:level="2"><nlm:affiliation>1 Department of Plant Pathology, Washington State University, Pullman, WA 99164-6430, U.S.A.</nlm:affiliation><country xml:lang="fr">États-Unis</country><wicri:regionArea>1 Department of Plant Pathology, Washington State University, Pullman, WA 99164-6430</wicri:regionArea><placeName><region type="state">Washington (État)</region></placeName></affiliation><affiliation wicri:level="2"><nlm:affiliation>3 Wheat Health, Genetics, and Quality Research Unit, Agriculture Research Service, U.S. Department of Agriculture, Pullman, WA 99164-6430, U.S.A.</nlm:affiliation><country xml:lang="fr">États-Unis</country><wicri:regionArea>3 Wheat Health, Genetics, and Quality Research Unit, Agriculture Research Service, U.S. Department of Agriculture, Pullman, WA 99164-6430</wicri:regionArea><placeName><region type="state">Washington (État)</region></placeName></affiliation></author></analytic><series><title level="j">Molecular plant-microbe interactions : MPMI</title><idno type="ISSN">0894-0282</idno><imprint><date when="2018" type="published">2018</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass><keywords scheme="KwdEn" xml:lang="en"><term>Basidiomycota (genetics)</term><term>Genome, Fungal (genetics)</term><term>Genomics (MeSH)</term><term>Genotype (MeSH)</term><term>High-Throughput Nucleotide Sequencing (MeSH)</term><term>Hordeum (microbiology)</term><term>Phenotype (MeSH)</term><term>Plant Diseases (microbiology)</term><term>Sequence Analysis, RNA (MeSH)</term><term>Triticum (microbiology)</term></keywords><keywords scheme="KwdFr" xml:lang="fr"><term>Analyse de séquence d'ARN (MeSH)</term><term>Basidiomycota (génétique)</term><term>Génome fongique (génétique)</term><term>Génomique (MeSH)</term><term>Génotype (MeSH)</term><term>Hordeum (microbiologie)</term><term>Maladies des plantes (microbiologie)</term><term>Phénotype (MeSH)</term><term>Séquençage nucléotidique à haut débit (MeSH)</term><term>Triticum (microbiologie)</term></keywords><keywords scheme="MESH" qualifier="genetics" xml:lang="en"><term>Basidiomycota</term><term>Genome, Fungal</term></keywords><keywords scheme="MESH" qualifier="génétique" xml:lang="fr"><term>Basidiomycota</term><term>Génome fongique</term></keywords><keywords scheme="MESH" qualifier="microbiologie" xml:lang="fr"><term>Hordeum</term><term>Maladies des plantes</term><term>Triticum</term></keywords><keywords scheme="MESH" qualifier="microbiology" xml:lang="en"><term>Hordeum</term><term>Plant Diseases</term><term>Triticum</term></keywords><keywords scheme="MESH" xml:lang="en"><term>Genomics</term><term>Genotype</term><term>High-Throughput Nucleotide Sequencing</term><term>Phenotype</term><term>Sequence Analysis, RNA</term></keywords><keywords scheme="MESH" xml:lang="fr"><term>Analyse de séquence d'ARN</term><term>Génomique</term><term>Génotype</term><term>Phénotype</term><term>Séquençage nucléotidique à haut débit</term></keywords></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en">Puccinia striiformis f. sp. tritici causes devastating stripe (yellow) rust on wheat and P. striiformis f. sp. hordei causes stripe rust on barley. Several P. striiformis f. sp. tritici genomes are available, but no P. striiformis f. sp. hordei genome is available. More genomes of P. striiformis f. sp. tritici and P. striiformis f. sp. hordei are needed to understand the genome evolution and molecular mechanisms of their pathogenicity. We sequenced P. striiformis f. sp. tritici isolate 93-210 and P. striiformis f. sp. hordei isolate 93TX-2, using PacBio and Illumina technologies and RNA sequencing. Their genomic sequences were assembled to contigs with high continuity and showed significant structural differences. The circular mitochondria genomes of both were complete. These genomes provide high-quality resources for deciphering the genomic basis of rapid evolution and host adaptation, identifying genes for avirulence and other important traits, and studying host-pathogen interactions.</div></front></TEI><pubmed><MedlineCitation Status="MEDLINE" Owner="NLM"><PMID Version="1">29792772</PMID><DateCompleted><Year>2019</Year><Month>01</Month><Day>04</Day></DateCompleted><DateRevised><Year>2019</Year><Month>01</Month><Day>04</Day></DateRevised><Article PubModel="Print-Electronic"><Journal><ISSN IssnType="Print">0894-0282</ISSN><JournalIssue CitedMedium="Print"><Volume>31</Volume><Issue>11</Issue><PubDate><Year>2018</Year><Month>11</Month></PubDate></JournalIssue><Title>Molecular plant-microbe interactions : MPMI</Title><ISOAbbreviation>Mol Plant Microbe Interact</ISOAbbreviation></Journal><ArticleTitle>Genome Sequence Resources for the Wheat Stripe Rust Pathogen (Puccinia striiformis f. sp. tritici) and the Barley Stripe Rust Pathogen (Puccinia striiformis f. sp. hordei).</ArticleTitle><Pagination><MedlinePgn>1117-1120</MedlinePgn></Pagination><ELocationID EIdType="doi" ValidYN="Y">10.1094/MPMI-04-18-0107-A</ELocationID><Abstract><AbstractText>Puccinia striiformis f. sp. tritici causes devastating stripe (yellow) rust on wheat and P. striiformis f. sp. hordei causes stripe rust on barley. Several P. striiformis f. sp. tritici genomes are available, but no P. striiformis f. sp. hordei genome is available. More genomes of P. striiformis f. sp. tritici and P. striiformis f. sp. hordei are needed to understand the genome evolution and molecular mechanisms of their pathogenicity. We sequenced P. striiformis f. sp. tritici isolate 93-210 and P. striiformis f. sp. hordei isolate 93TX-2, using PacBio and Illumina technologies and RNA sequencing. Their genomic sequences were assembled to contigs with high continuity and showed significant structural differences. The circular mitochondria genomes of both were complete. These genomes provide high-quality resources for deciphering the genomic basis of rapid evolution and host adaptation, identifying genes for avirulence and other important traits, and studying host-pathogen interactions.</AbstractText></Abstract><AuthorList CompleteYN="Y"><Author ValidYN="Y"><LastName>Xia</LastName><ForeName>Chongjing</ForeName><Initials>C</Initials><Identifier Source="ORCID">0000-0002-4865-7920</Identifier><AffiliationInfo><Affiliation>1 Department of Plant Pathology, Washington State University, Pullman, WA 99164-6430, U.S.A.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Wang</LastName><ForeName>Meinan</ForeName><Initials>M</Initials><AffiliationInfo><Affiliation>1 Department of Plant Pathology, Washington State University, Pullman, WA 99164-6430, U.S.A.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Yin</LastName><ForeName>Chuntao</ForeName><Initials>C</Initials><AffiliationInfo><Affiliation>1 Department of Plant Pathology, Washington State University, Pullman, WA 99164-6430, U.S.A.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Cornejo</LastName><ForeName>Omar E</ForeName><Initials>OE</Initials><AffiliationInfo><Affiliation>2 School of Biological Sciences, Washington State University; and.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Hulbert</LastName><ForeName>Scot H</ForeName><Initials>SH</Initials><AffiliationInfo><Affiliation>1 Department of Plant Pathology, Washington State University, Pullman, WA 99164-6430, U.S.A.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Chen</LastName><ForeName>Xianming</ForeName><Initials>X</Initials><Identifier Source="ORCID">0000-0002-9013-5974</Identifier><AffiliationInfo><Affiliation>1 Department of Plant Pathology, Washington State University, Pullman, WA 99164-6430, U.S.A.</Affiliation></AffiliationInfo><AffiliationInfo><Affiliation>3 Wheat Health, Genetics, and Quality Research Unit, Agriculture Research Service, U.S. Department of Agriculture, Pullman, WA 99164-6430, U.S.A.</Affiliation></AffiliationInfo></Author></AuthorList><Language>eng</Language><PublicationTypeList><PublicationType UI="D016428">Journal Article</PublicationType><PublicationType UI="D013485">Research Support, Non-U.S. Gov't</PublicationType><PublicationType UI="D013487">Research Support, U.S. Gov't, P.H.S.</PublicationType></PublicationTypeList><ArticleDate DateType="Electronic"><Year>2018</Year><Month>09</Month><Day>07</Day></ArticleDate></Article><MedlineJournalInfo><Country>United States</Country><MedlineTA>Mol Plant Microbe Interact</MedlineTA><NlmUniqueID>9107902</NlmUniqueID><ISSNLinking>0894-0282</ISSNLinking></MedlineJournalInfo><CitationSubset>IM</CitationSubset><MeshHeadingList><MeshHeading><DescriptorName UI="D001487" MajorTopicYN="N">Basidiomycota</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="Y">genetics</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D016681" MajorTopicYN="N">Genome, Fungal</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="Y">genetics</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D023281" MajorTopicYN="Y">Genomics</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D005838" MajorTopicYN="N">Genotype</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D059014" MajorTopicYN="N">High-Throughput Nucleotide Sequencing</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D001467" MajorTopicYN="N">Hordeum</DescriptorName><QualifierName UI="Q000382" MajorTopicYN="Y">microbiology</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D010641" MajorTopicYN="N">Phenotype</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D010935" MajorTopicYN="N">Plant Diseases</DescriptorName><QualifierName UI="Q000382" MajorTopicYN="Y">microbiology</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D017423" MajorTopicYN="N">Sequence Analysis, RNA</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D014908" MajorTopicYN="N">Triticum</DescriptorName><QualifierName UI="Q000382" MajorTopicYN="Y">microbiology</QualifierName></MeshHeading></MeshHeadingList></MedlineCitation><PubmedData><History><PubMedPubDate PubStatus="pubmed"><Year>2018</Year><Month>5</Month><Day>25</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate><PubMedPubDate PubStatus="medline"><Year>2019</Year><Month>1</Month><Day>5</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate><PubMedPubDate PubStatus="entrez"><Year>2018</Year><Month>5</Month><Day>25</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate></History><PublicationStatus>ppublish</PublicationStatus><ArticleIdList><ArticleId IdType="pubmed">29792772</ArticleId><ArticleId IdType="doi">10.1094/MPMI-04-18-0107-A</ArticleId></ArticleIdList></PubmedData></pubmed><affiliations><list><country><li>États-Unis</li></country><region><li>Washington (État)</li></region></list><tree><noCountry><name sortKey="Cornejo, Omar E" sort="Cornejo, Omar E" uniqKey="Cornejo O" first="Omar E" last="Cornejo">Omar E. Cornejo</name></noCountry><country name="États-Unis"><region name="Washington (État)"><name sortKey="Xia, Chongjing" sort="Xia, Chongjing" uniqKey="Xia C" first="Chongjing" last="Xia">Chongjing Xia</name></region><name sortKey="Chen, Xianming" sort="Chen, Xianming" uniqKey="Chen X" first="Xianming" last="Chen">Xianming Chen</name><name sortKey="Chen, Xianming" sort="Chen, Xianming" uniqKey="Chen X" first="Xianming" last="Chen">Xianming Chen</name><name sortKey="Hulbert, Scot H" sort="Hulbert, Scot H" uniqKey="Hulbert S" first="Scot H" last="Hulbert">Scot H. Hulbert</name><name sortKey="Wang, Meinan" sort="Wang, Meinan" uniqKey="Wang M" first="Meinan" last="Wang">Meinan Wang</name><name sortKey="Yin, Chuntao" sort="Yin, Chuntao" uniqKey="Yin C" first="Chuntao" last="Yin">Chuntao Yin</name></country></tree></affiliations></record>Pour manipuler ce document sous Unix (Dilib)
EXPLOR_STEP=$WICRI_ROOT/Bois/explor/RustFungiV1/Data/Main/Exploration
HfdSelect -h $EXPLOR_STEP/biblio.hfd -nk 000370 | SxmlIndent | more
Ou
HfdSelect -h $EXPLOR_AREA/Data/Main/Exploration/biblio.hfd -nk 000370 | SxmlIndent | more
Pour mettre un lien sur cette page dans le réseau Wicri
{{Explor lien
|wiki= Bois
|area= RustFungiV1
|flux= Main
|étape= Exploration
|type= RBID
|clé= pubmed:29792772
|texte= Genome Sequence Resources for the Wheat Stripe Rust Pathogen (Puccinia striiformis f. sp. tritici) and the Barley Stripe Rust Pathogen (Puccinia striiformis f. sp. hordei).
}}
Pour générer des pages wiki
HfdIndexSelect -h $EXPLOR_AREA/Data/Main/Exploration/RBID.i -Sk "pubmed:29792772" \
| HfdSelect -Kh $EXPLOR_AREA/Data/Main/Exploration/biblio.hfd \
| NlmPubMed2Wicri -a RustFungiV1
| This area was generated with Dilib version V0.6.38. |  |